Sequencing Pipeline Developer6 months contract.Duties:Maintain and expand the functionality of existing scripts & applicationsDesign and develop new scripts and processes for automation, sequencing pipeline workflows, reporting, data transfers, archiving, service lifecycle management, and maintenance and upgradesTroubleshoot anomalies in script or application functionality and output as they relate to sequencing pipeline workflows, builds, data transfers, and archivingWork alongside the scientists to understand sequencing pipeline inputs and outputsManage lifecycle of products and services from inception to deployment and supportSkills:Please note: Only experienced candidates with a strong, currently active background in scripting and/or application development will be considered, and on the job training will not be offered due to the complexity of the existing environment.Required:3+ years experience in developmentExtensive, working experience with scripting languages such as R, Python, Perl, C or Java; the Bash command language alone is not sufficient, but requiredWorking experience using version control, specifically GitWorking experience with Linux operating systems, such as RHEL or UbuntuWorking experience with storage, such as GPFS or Isilon or S3Desired:Specific knowledge of and experience developing R/Shiny applicationsKnowledge or usage of Shiny Server Pro and/or RStudioKnowledge of Nextflow or other workflow frameworkExperience with configuration management tools, such as Ansible or Puppet or BrightStrong understanding of user interfaces and user experienceDeep knowledge of Linux system administrationExperience with High Performance Computing (HPC) clustersExperience with HPC job schedulers, such as UGE, LSF, or SlurmKnowledge of cloud platforms, such as AWS or GCPEducation:Required Education: Bachelor's degreePreferred Education: Master's degree